There are two methods for indicating which algorithms you would like to have run on your input sequences. You can use any of them in combination. Choose one or more of the default algorithms and/or upload a user-created algorithm in ASI2 format.
Sequence information can be entered in FASTA, plain text, or GRF (Bayer Diagnostics) format.
Sequences in FASTA format or plain text can be pasted in the text box (option A) or uploaded (option B).
GRF files can only be uploaded (option C). Using options A or B, it is possible to analyze up to 100 sequences at a time (character limit:600,000). Example data set: a small set (n=10)
The output can be customized to display the results using the original interpretation of each algorithm or a normalized interpretation in which the 3 levels of the ANRS and Rega are assigned Susceptible (S), Intermediate (I), Resistant (R) and the HIVDB levels are mapped to SIR: Susceptible, Potential Low-Level => S; Low-level, Intermediate => I; Resistant => R and an optional identifier and date. For further explanations and sample datasets please see the Release Notes.